Post tagged: gene expression

Enhancer Journal Club: Functional annotation of native enhancers with a Cas9-histone demethylase fusion

I really enjoyed Eric Mendenhall's 2013 paper in Nature Biotechnology1, where he was able to target LSD1 histone demethylase activity to endogenous enhancers using TALE fusion proteins (read my thoughts on that paper here). So I was very interested to see a similar approach published earlier this year in …

Enhancer Journal Club: eRNAs are required for p53-dependent enhancer activity and gene transcription.

Back to eRNAs, and this time we're going to look at possible roles in DNA damage control. This paper by Melo et al. is from Reuven Agami's lab at the Netherlands Cancer Institute. The abstract is as follows:

Binding within or nearby target genes involved in cell proliferation and survival …

Enhancer Journal Club: Locus-specific editing of histone modifications at endogenous enhancers.

Moving away from enhancer/promoter looping for a little while, I came across this nice paper from the Bernstein lab at the Howard Hughes Medical Institute. This paper is about assigning enhancers to their cognate genes, and also has some interesting implications for the causality of histone modifications on active …